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Publications

2011

N. Andrysco, P. Rosen, V. Popescu, B. Benes, K.R. Gurney. “Experiences in Disseminating Educational Visualizations,” In Lecture Notes in Computer Science (7th International Symposium on Visual Computing), Vol. 2, pp. 239--248. September, 2011.
DOI: 10.1007/978-3-642-24031-7_24

J.C. Bennett, V. Krishnamoorthy, S. Liu, R.W. Grout, E.R. Hawkes, J.H. Chen, J. Shepherd, V. Pascucci, P.-T. Bremer. “Feature-Based Statistical Analysis of Combustion Simulation Data,” In IEEE Transactions on Visualization and Computer Graphics, Proceedings of the 2011 IEEE Visualization Conference, Vol. 17, No. 12, pp. 1822--1831. 2011.

H. Bhatia, S. Jadhav, P.-T. Bremer, G. Chen, J.A. Levine, L.G. Nonato, V. Pascucci. “Edge Maps: Representing Flow with Bounded Error,” In Proceedings of IEEE Pacific Visualization Symposium 2011, Hong Kong, China, pp. 75--82. March, 2011.
DOI: 10.1109/PACIFICVIS.2011.5742375

A.N.M. Imroz Choudhury, P. Rosen. “Abstract Visualization of Runtime Memory Behavior,” In 6th IEEE International Workshop on Visualizing Software for Understanding and Analysis (VISSOFT 2011), pp. 22--29. 2011.

T. Peterka, R. Ross, A. Gyulassy, V. Pascucci, W. Kendall, H.-W. Shen, T.-Y. Lee, A. Chaudhuri. “Scalable Parallel Building Blocks for Custom Data Analysis,” In Proceedings of the 2011 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), pp. (to appear). 2011.

P. Rosen, V. Popescu. “An Evaluation of 3-D Scene Exploration Using a Multiperspective Image Framework,” In Visual Computer 27 (Computer Graphics International 2011), Vol. 27, No. 6-8, Springer-Verlag New York, Inc., pp. 623--632. 2011.
DOI: 10.1007/s00371-011-0599-2

P. Rosen, V. Popescu. “Simplification of Node Position Data for Interactive Visualization of Dynamic Datasets,” In Transactions on Computer Graphics and Visualization, Vol. (PrePrints), 2011.

M. Schott, A.V.P. Grosset, T. Martin, V. Pegoraro, S.T. Smith, C.D. Hansen. “Depth of Field Effects for Interactive Direct Volume Rendering,” In Proceedings of Eurographics/IEEE Symposium on Visualization 2011, Vol. 30, No. 3, Edited by H. Hauser, H. Pfister, and J. J. van Wijk, 2011.

D. Thompson, J.A. Levine, J.C. Bennett, P.-T. Bremer, A. Gyulassy, V. Pascucci, P.P. Pebay. “Analysis of Large-Scale Scalar Data Using Hixels,” In Proceedings of the 2011 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), pp. (to appear). 2011.

H.T. Vo, J. Bronson, B. Summa, J.L.D. Comba, J. Freire, B. Howe, V. Pascucci, C.T. Silva. “Parallel Visualization on Large Clusters using MapReduce,” In Proceedings of the 2011 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), pp. (to appear). 2011.

B. Wang, B. Summa, V. Pascucci, M. Vejdemo-Johansson. “Branching and Circular Features in High Dimensional Data,” In IEEE Transactions of Visualization and Computer Graphics (TVCG), Vol. 17, No. 12, pp. 1902--1911. December, 2011.

S. Williams, M. Petersen, P.-T. Bremer, M. Hecht, V. Pascucci, J. Ahrens, M. Hlawitschka, B. Hamann. “Adaptive Extraction and Quantification of Geophysical Vortices,” In IEEE Transactions on Visualization and Computer Graphics, Proceedings of the 2011 IEEE Visualization Conference, Vol. 17, No. 12, pp. 2088--2095. 2011.

2010

M. Berger, L.G. Nonato, V. Pascucci, C.T. Silva. "Fiedler Trees for Multiscale Surface Analysis," In Computers & Graphics, London, UK, Note: Special Issue of Sha, Vol.34, No. 3, pp. 272--281, 2010.

C. Brownlee, V. Pegoraro, S. Shankar, P. McCormick, C.D. Hansen. “Physically-Based Interactive Schlieren Flow Visualization,” In Proceedings of IEEE Pacific Visualization 2010, Note: Won Best Paper Award!, 2010.

C. Brownlee, V. Pegoraro, S. Shankar, P.S. McCormick, C.D. Hansen. “Physically-Based Interactive Flow Visualization Based on Schlieren and Interferometry Experimental Techniques,” IEEE Transactions on Visualization and Computer Graphics, 2010.

T. Etiene, L.G. Nonato, C.E. Scheidegger, J. Tierny, T.J. Peters, V. Pascucci, R.M. Kirby, C.T. Silva. "Topology Verification for Isosurface Extraction," SCI Technical Report, No. UUSCI-2010-003, SCI Institute, University of Utah, 2010.

S. Gerber, P.-T. Bremer, V. Pascucci, R.T. Whitaker. "Visual Exploration of High Dimensional Scalar Functions," In Proceedings of Visualization 2010, IEEE Transactions on Visualization and Computer Graphics, Vol. 16, No. 6, pp. 1271--1280, 2010.

S. Jadhav, H. Bhatia, P.-T. Bremer, J.A. Levine, L.G. Nonato, V. Pascucci. "Consistent Approximation of Local Flow Behavior for 2D Vector Fields using Edge Maps," SCI Technical Report, No. UUSCI-2010-004, SCI Institute, University of Utah, 2010.

S. Kumar, V. Vishwanath, P. Carns, V. Pascucci, R. Latham, T. Peterka, M. Papka, R. Ross. "Towards Efficient Access of Multi-dimensional, Multi-resolution Scientific Data," In Proceedings of the 5th Petascale Data Storage Workshop, Supercomputing 2010, pp. (in press). 2010.

Allen R. Sanderson, Scott Kruger, and Stephane Either. "Visualization and Analysis Tools for Assisting in Evaluating Fusion Simulations," In Proceedings of the Sherwood Fusion Theory Conference, 2010.

A.R. Sanderson, G. Chen, X. Tricoche, D. Pugmire, S. Kruger, J. Breslau. "Analysis of Recurrent Patterns in Toroidal Magnetic Fields," In Proceedings Visualization / Information Visualization 2010, IEEE Transactions on Visualization and Computer Graphics, Vol. 16, No. 6, 2010.

B. Summa, G. Scorzelli, M. Jiang, P.-T. Bremer, V. Pascucci. "Interactive Editing of Massive Imagery Made Simple: Turning Atlanta into Atlantis," In ACM Transactions on Graphics, Vol. 29, No. 5, pp. (published online). 2010.

Y. Wan, C.D. Hansen. “Fast Volumetric Data Exploration with Importance-Based Accumulated Transparency Modulation,” In Proceedings of IEEE/EG International Symposium on Volume Graphics 2010, Edited by R. Westermann and G. Kindlmann, pp. (to appear). 2010.

2009

E. W. Bethel, C. Johnson, S. Ahern, J. Bell, P.-T. Bremer, H. Childs, E. Cormier-Michel, M. Day, E. Deines, T. Fogal, C. Garth, C. G. R. Geddes, H. Hagen, B. Hamann, C. Hansen, J. Jacobsen, K. Joy, J. Krüger, J. Meredith, P. Messmer, G. Ostrouchov, V. Pascucci, K. Potter, Prabhat, D. Pugmire, O. Rübel, A. Sanderson, C. Silva, D. Ushizima, G. Weber, B. Whitlock, K. Wu. "Occam's Razor and Petascale Visual Data Analysis." In Journal of Physics Conference Series, Proceedings of SciDAC 2009. LBNL-2210E.

E. Wes Bethel. "High Performance, Three-dimensional Bilateral Filtering" Lawrence Berkeley National Laboratory, Tech Report LBNL-1601E, 2009.

E. Wes Bethel, Oliver Rübel, Prabhat, Kesheng Wu, Gunther H. Weber, Valerio Pascucci, Hank Childs, Ajith Mascarenhas, Jeremy Meredith, and Sean Ahern. "Modern Scientific Visualization is More than Just Pretty Pictures." In: Numerical Modeling of Space Plasma Flows: Astronum-2008 (Astronomical Society of the Pacific Conference Series). (LBNL-1450E)

P.-T. Bremer, G.H. Weber, V. Pascucci, M.S. Day and John B. Bell, "Analyzing and Tracking Burning Structures in Lean Premixed Hydrogen Flames" In IEEE Transactions on Visualization and Computer Graphics, in press. LBNL-2276E.

J. Brouillat, C. Bouville, B. Loos, C.D. Hansen, K. Bouatouch. “A Bayesian Monte Carlo Approach to Global Illumination,” In Computer Graphics Forum Journal, Early View, Vol. 28, No. 8, pp. 2315--2329. October, 2009.

S. E. Dillard, V. Natarjan, G. H. Weber, V. Pascucci and B. Hamann. "Topology-guided Tessellation of Quadratic Elements" In International Journal of Computational Geometry and Applications (IJCGA), 19(2), April, special issue, pp. 196-211, 2009. LBNL-63771.

C. G. R. Geddes, E Cormier-Michel, E. H. Esarey, C. B. Schroeder, J.-L. Vay, W. P. Leemans, D. L.. Bruhwiler, J. R. Cary, B. Cowan, M. Durant, P. Hamill, P. Messmer, P. Mullowney, C. Nieter, K. Paul, S. Shasharina, S. Veitzer, G. Weber, O. Rübel, D. Ushizima, Prabhat, E. W.Bethel, K. Wu. "Large Fields for Smaller Facility Sources" SciDAC Review, Number 13, Summer 2009. LBNL-2299E.

S. Gerber, P.-T. Bremer, V. Pascucci, R.T. Whitaker. "Visual Exploration of High Dimensional Scalar Functions," In Proceedings of Visualization 2010, IEEE Transactions on Visualization and Computer Graphics, pp. (to appear). 2010.

Luke Gosink, Kesheng Wu, E. Wes Bethel, John D. Owens, Kenneth I. Joy. "Data Parallel Bin-based Indexing for Answering Queries on Multi-core Architectures" In Proceedings of the 21st International Conference on Scientific and Statistical Database Management (SSDBM), pp 110-129. New Orleans, LA, June 2009.

C.D. Hansen, C.R. Johnson, V. Pascucci, C.T. Silva. “Visualization for Data-Intensive Science,” In The Fourth Paradigm of Scientific Discovery, Edited by Dan Fay, Kristin Tolle and Tony Hey, Microsoft Research, 2009.

Mario Hlawitschka, Christoph Garth, Xavier Tricoche, Gordon Kindlmann, Gerik Scheuermann, Kenneth I. Joy, Bernd Hamann. "Direct Visualization of Fiber Information by Coherence", In International Journal of Computer Assisted Radiology and Surgery, Springer Berlin / Heidelberg, published online, 2009.

M. Hlawitschka, G.H. Weber, A. Anwander, O.T. Carmichael, B. Hamann and G. Scheuermann. "Interactive Volume Rendering of Diffusion Tensor Data" In Visualization and Processing of Tensor Fields: Advances and Perspectives. Springer-Verlag, Heidelberg, Germany, pp. 161-176, April, 2009. LBNL-2286E.

Shoaib Kamil, Cy Chan, Sam Williams, Leonid Oliker, John Shalf, Mark Howison, E. Wes Bethel, Prabhat. "A Generalized Framework for Auto-tuning Stencil Computations" In CUG 2009, May 4-7, 2009, Atlanta GA, USA. Best Paper Award winner. (LBNL-2078E).

A. Knoll, I. Wald, C.D. Hansen. “Coherent Multiresolution Isosurface Ray Tracing,” In The Visual Computer, Vol. 25, No. 3, pp. 209--225. 2009.

A. Knoll, Y. Hijazi, C.D. Hansen, I. Wald, H. Hagen. “Fast Ray Tracing of Arbitrary Implicit Surfaces with Interval and Affine Arithmetic,” In Computer Graphics Forum, Vol. 28, No. 1, pp. 26--40. 2009.

A. Knoll, Y. Hijazi, R. Westerteiger, M. Schott, C.D. Hansen, Hans Hagen. “Volume Ray Casting with Peak Finding and Differential Sampling,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 15, No. 6, pp. 1571-1578. 2009.

Hari Krishnan AND Christoph Garth AND Kenneth I. Joy. "Time and Streak Surfaces for Flow Visualization in Large Time-Varying Data Sets" Proceedings of IEEE Visualization '09, Atlantic City, New Jersey, 2009.

K. Potter, A. Wilson, P.-T. Bremer, D. Williams, C. Doutriaux, V. Pascucci, C.R. Johhson. "Visualization of Uncertainty and Ensemble Data: Exploration of Climate Modeling and Weather Forecast Data with Integrated ViSUS-CDAT Systems," In Proceedings of SciDAC 2009, Journal of Physics: Conference Series, Vol. 180, No. 012089, pp. (published online). 2009.

Dave Pugmire, Hank Childs, Christoph Garth, Sean Ahern, Gunther Weber. "Scalable Computation of Streamlines on Very Large Datasets" In Proceedings of Supercomputing 2009, 2009.

N. Shah, N., S. E. Dillard, G.H. Weber, B. Hamann. "Volume visualization of multiple alignment of large genomic DNA" In Mathematical Foundations of Scientific Visualization, Computer Graphics, and Massive Data Exploration, Springer-Verlag, Heidelberg, Germany, pp. 325-342, July, 2009. LBNL-63126.

J. Tierny, A. Gyulassy, E. Simon, V. Pascucci. "Loop Surgery for Volumetric Meshes: Reeb Graphs Reduced to Contour Trees," In IEEE Transactions on Visualization and Computer Graphics, Proceedings of the 2009 IEEE Visualization Conference, pp. (accepted). Sept/Oct, 2009.

H.T. Vo, D.K. Osmari, B. Summa, J.L.D. Comba, V. Pascucci, C.T. Silva. "Parallel Dataflow Scheme for Streaming (Un)Structured Data," SCI Technical Report, No. UUSCI-2009-004, SCI Institute, University of Utah, 2009.

Y. Wan, H. Otsuna, C.-B. Chien, C.D. Hansen. “An Interactive Visualization Tool for Multi-Channel Confocal Microscopy Data in Neurobiology Research,” In IEEE Transactions on Visualization and Computer Graphics, Proceedings of the 2009 IEEE Visualization Conference, Vol. 15, No. 6, pp. 1489--1496. Sept/Oct, 2009.

G. H. Weber, O. Rübel, M.-Y. Huang, A. H. DePace, C. C. Fowlkes, S. V. E. Keränen, C. L. Luengo Hendriks, H. Hagen, D. W. Knowles, J. Malik, M. D. Biggin and B. Hamann. "Visual exploration of three-dimensional gene expression using physical views and linked abstract views" In IEEE Transactions on Computational Biology and Bioinformatics., 6(2), April-June, pp. 296-309, 2009. LBNL-63776.

K. Wu, S. Ahern, E. W. Bethel, J. Chen, H. Childs, E. Cormier-Michel, C. Geddes, J. Gu, H. Hagen, B. Hamann, W. Koegler, J. Lauret, J. Meredith, P. Messmer, E. Otoo, V. Perevoztchikov, A. Poskanzer, Prabhat, O. Rübel, A. Shoshani, A. Sim, K. Stockinger, G. Weber, W.-M. Zhang. "FastBit: Interactively Searching Massive Data" In Journal of Physics Conference Series, Proceedings of SciDAC 2009. (LBNL-2164E)

2008

E. W. Anderson, J. Ahrens, K. Heitmann, S. Habib, and C. Silva. "Provenance in Comparative Analysis: A Study in Cosmology" Computing in Science and Engineering, 10(3):30-37, 2008.

John Anderson, Christoph Garth, Mark A. Duchaineau and Kenneth I. Joy. "Discrete Multi-Material Interface Reconstruction for Volume Fraction Data" Proceedings of the European Visualization Conference, Computer Graphics Forum, Vol. 27, No. 3, 2008, 1015-1022.

Cecilia Aragon, Stephen Bailey, Sarah Poon, Karl Runge, and Rollin Thomas, "Sunfall: A Collaborative Visual Analytics System for Astrophysics" Proceedings of SciDAC. LBNL-657E.

A. Baptista, B. Howe, J. Freire, D. Maier, and C. Silva. "Scientific Exploration in the Era of Ocean Observatories" Computing in Science and Engineering, 10(3):53-58, 2008.

L. Bavoil, S. Callahan, and C. Silva. "Robust Soft Shadow Mapping with Depth Peeling" Journal of Graphics Tools, 13(1):19-30, 2008.

J. Bellmann, F. Michel, E. Deines, M. Hering-Bertram, J. Mohring, H. Hagen. "Sound Tracing: Rendering Listener Specific Acoustic Room Properties" Computer Graphics Forum, Volume 27, Issue 3, pp. 943-950, 2008.

K. Bürger, J. Krüger, R. Westermann. "Direct Volume Editing" IEEE Transactions on Visualization and Computer Graphics, 14(6), Proceedings of IEEE Visualization 2008.

S. P. Callahan, J. H. Callahan, C. E. Scheidegger, and C. Silva. "Direct Volume Rendering: A 3D Plotting Technique for Scientific Data", In Computing in Science and Engineering, 10(1):88-92, 2008.

M. Chen, M. Kirby, C. Hansen, T. Moller. "A Staggered Grid for Multi-resolution Volume Rendering" Computer Graphics Forum Journal. Accepted.

J. Daniels, T. Ochotta, L. Ha, and C. Silva. "Spline-Based Feature Curves from Point-Sampled Geometry" The Visual Computer, 24(6):449-462, 2008.

J. Daniels, C. Silva, J. Shepherd, and E. Cohen. "Quadrilateral Mesh Simplification" In ACM Transactions on Graphics (Proceedings of SIGGRAPH Asia 2008).

C. Dietrich, J. Comba, L. Nedel, C. Scheidegger, and C. Silva. "Edge Groups: A New Approach to Understanding the Mesh Quality of Marching Methods" In IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE Visualization 2008).

C. C. Fowlkes, C. L. Luengo Hendriks, S. V. E. Keränen, G. H. Weber, O. Rübel, M.-Y. Huang, S. Chatoor, A. H. DePace, L. Simirenko, C. Henriquez, A. Beaton, R. Weiszmann, S. Celniker, B. Hamann, D. W. Knowles, M. D. Biggin, M. B. Eisen, J. Malik. "A Quantitative Spatio-temporal Atlas of Gene Expression in the Drosophila Blastoderm" Cell Vol 133, 364-374, 18 April 2008.

J. Freire, D. Koop, E. Santos, and C. Silva. "Provenance for Computational Tasks: A Survey" Computing in Science and Engineering, 10(3):11-21, 2008.

Christoph Garth, Xavier Trichoche and Kenneth I. Joy. "Lagrangian Visualization of Flow-Embedded Surface Structures" In Proceedings of the European Visualization Conference, Computer Graphics Forum, Vol. 27, No. 3, pp. 767-774, 2008.

Christoph Garth, Harinan Krishnan, Xavier Tricoche, Thomas Bobach and Kenneth I. Joy. "Generation of Accurate Integral Surfaces in Time-Dependent Vector Fields" IEEE Transactions on Visualization and Computer Graphics, 14(6), Proceedings of IEEE Visualization 2008.

Luke J. Gosink, John C. Anderson, E. Wes Bethel, Kenneth I. Joy. "Query-Driven Visualization of Time-Varying Adaptive Mesh Refinement Data" LBNL-803E. IEEE Transactions on Visualization and Computer Graphics, 14(6), Proceedings of IEEE Visualization 2008.

R. M. Kirby and C. Silva. "The Need for Verifiable Visualization" In IEEE Computer Graphics and Applications, 2008.

A. Knoll, Y. Hijazi, C. Hansen, I. Wald, and H. Hagen. "Interactive Ray Tracing of Arbitrary Implicit Functions" Computer Graphics Forum Journal. Accepted, 2008.

A. Knoll, I. Wald and C. Hansen. "Coherent Multiresolution Isosurface Ray Tracing" The Visual Computer, 2008. To Appear.

D. Koop, C. Scheidegger, S. Callahan, J. Freire, and C. Silva. "VisComplete: Data-driven Suggestions for Visualization Systems" In IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE Visualization 2008).

J. Krueger, K. Potter, R. MacLeod, C.R. Johnson. "Unified Volume Format: A General System For Efficient Handling Of Large Volumetric Datasets," In Proceedings of IADIS Computer Graphics and Visualization 2008 (CGV 2008), pp. (accepted). 2008.

G. Li, C. Hansen, X. Tricoche. "Physically-based Dye Advection for Flow Visualization" Computer Graphics Forum Journal, Volume 27, Number 3, 2008, pp. 727-73.

B. Paul, S. Ahern, E. W. Bethel, E. Brugger, R. Cook, J. Daniel, K. Lewis, J. Owen, and D. Southard. "Chromium Renderserver: Scalable and Open Remote Rendering Infrastructure" IEEE Transactions on Visualization and Computer Graphics, 14(3), May/June 2008. LBNL-63693.

K. Potter, J. Krueger, C.R. Johnson. "Towards the Visualization of Multi-Dimentional Stochastic Distribution Data," In Proceedings of The International Conference on Computer Graphics and Visualization (IADIS) 2008, pp. (accepted). 2008.

O. Rübel, G. H. Weber, M-Y Huang, E. W. Bethel, M. D. Biggin, C. C. Fowlkes, C. Luengo Hendriks, S. V. E. Keränen, M. Eisen, D. Knowles, J. Malik, H. Hagen and B. Hamann, "Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data", IEEE Transactions on Computational Biology and Bioinformatics. 2008. (To appear) LBNL-382E.

C. Scheidegger, J. Schreiner, B. Duffy, H. Carr and C. Silva. "Revisiting Histograms and Isosurface Statistics" IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE Visualization 2008).

C. Scheidegger, D. Koop, E. Santos, H. Vo, S. Callahan, J. Freire, and C. Silva. "Tackling the Provenance Challenge One Layer at a Time", In Concurrency And Computation: Practice And Experience, 20(5):473--483, 2008.

C. Silva and J. Tohline. "Guest Editorial: Special Issue on Computational Provenance" In Computing in Science and Engineering, 10(3):9-10, 2008.

A.R. Sanderson, M.D. Meyer, R.M. Kirby, C.R. Johnson. "A Framework for Exploring Numerical Solutions of Advection-Reaction-Diffusion Equations Using a GPU-Based Approach," In Computing and Visualization in Science, published online, 2008.
ISSN: 1432-9360

G., X. Tricoche, D. Weiskopf, C. Hansen. "Flow Charts: Visualization of Vector Fields on Arbitrary Surfaces" IEEE Transactions on Visualization and Computer Graphics, Volume 14, Number 5, 2008, pp. 1067-1080.

G. H. Weber, O. Rübel, M.-Y. Huang, A. H. DePace, C. C. Fowlkes, S. V. E. Keränen, C. L. Luengo Hendriks, H. Hagen, D. W. Knowles, J. Malik, M. D. Biggin and B. Hamann. "Visual exploration of three-dimensional gene expression using physical views and linked abstract views" To appear in:IEEE Transactions on Computational Biology and Bioinformatics. LBNL-63776.

Conference Proceedings

Cecilia Aragon, Sarah Poon, Gregory Aldering, Rollin Thomas, and Robert Quimby, "Using Visual Analytics to Maintain Situation Awareness in Astrophysics" Proceedings of the IEEE Symposium on Visual Analytics Science and Technology (IEEE VAST 2008). LBNL-658E.

S. P. Callahan, J. Freire, C. E. Scheidegger, C. Silva, and Huy T. Vo. "Towards Provenance-Enabling ParaView", Second International Provenance and Annotation Workshop (IPAW 2008).

T. Ellkvist, D. Koop, E. W. Anderson, J. Freire, and C. Silva. "Using Provenance to Support Real-Time Collaborative Design of Workflows" Second International Provenance and Annotation Workshop (IPAW 2008).

J. Freire and C. Silva. "Towards Enabling Social Analysis of Scientific Data", CHI Social Data Analysis Workshop, 2008.

L. Lins, D. Koop, E. W. Anderson, S. P. Callahan, E. Santos, C. E. Scheidegger, J. Freire, and C. T. Silva. "Examining Statistics of Workflow Evolution Provenance: A First Study" Statistical and Scientific Database Management (SSDBM) 2008.

K. Potter and J. Krueger and C.R. Johnson. "Towards the Visualization of Multi-Dimensional Stochastic Distribution Data" In Proceedings of the International Conference on Computer Graphics and Visualization, July 2008.

D. Pugmire, H. Childs, S. Ahern. "Parallel Analysis and Visualization on Cray Compute Node Linux" In Proceedings of the Cray Users Group Meeting, May 2008.

O. Rübel, Prabhat, K. Wu, H. Childs, J. Meredith, C.G.R. Geddes, E. Cormier-Michel, S. Ahern, G.H. Weber, P. Messmer, H. Hagen, B. Hamann and E.W. Bethel, "High Performance Multivariate Visual Data Exploration for Extremely Large Data" SC08, Austin TX, November, 2008. LBNL-716E.

E. Santos, L. Lins, J. P. Ahrens, J. Freire, and C. Silva. "A First Study on Clustering Collections of Workflow Graphs" Second International Provenance and Annotation Workshop (IPAW 2008).

C. E. Scheidegger, H. T. Vo, D. Koop, J. Freire, and C. Silva. "Querying and Re-Using Workflows with VisTrails", ACM SIGMOD 2008.

D. M. Ushizima, O. Rübel, Prabhat, G. H. Weber, E. W. Bethel, C. R. Aragon, C. G. Geddes, E. Cormier-Michel, and B. Hamann. "Automated analysis for detecting beams in simulations" In Proceedings of the Seventh International Conference on Machine Learning and Applications, Dec. 2008.

G.H. Weber, V. Beckner, H. Childs, T. Ligocki, M. Miller, B. van Straalen, E.W. Bethel. "Visualization of Scalar Adaptive Mesh Refinement Data" in: Numerical Modeling of Space Plasma Flows: Astronum-2007 (Astronomical Society of the Pacific Conference Series), volume 385, pp. 309-320, 2008. LBNL-220E.

H. Wang, C. E. Scheidegger, and C. Silva. "Optimal Bandwidth Selection for MLS Surfaces", IEEE International Conference on Shape Modeling and Applications (SMI), (Awarded Best Paper), 2008.

Posters

E. Wes Bethel, C.R. Johnson, C. Aragon, Prabhat, O. Rübel, G.Weber, V. Pascucci, H. Childs, P.-T. Bremer, A. Mascarenhas, B. Whitlock, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, B. Hamann, C. Garth, M. Cole, C. Hansen, S. Parker, A. Sanderson, C.T. Silva, and X. Tricoche. "DOE SciDAC Visualization and Analytics Center for Enabling Technologies" In 2008 DOE ASCR CS PI Meeting, Denver, CO, USA, April 2008.

O. Rübel, Prabhat, K. Wu, H. Childs, J. Meredith, C.G.R. Geddes, E. Cormier-Michel, S. Ahern, G.H. Weber, P. Messmer, H. Hagen, B. Hamann and E.W. Bethel, "Application of High-performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data" Poster at IEEE Visualization 2008, Columbus, Ohio, October 19-24, 2008.

Invited Articles

E. Wes Bethel, Chris Johnson, Charles Hansen, Claudio Silva, Steven Parker, Allen Sanderson, Lee Myers, Martin Cole, Xavier Tricoche, Sean Ahern, George Ostrouchov, Dave Pugmire, Jamison Daniel, Jeremy Meredith, Valerio Pascucci, Hank Childs, Peer-Timo Bremer, Ajith Mascarenhas, Ken Joy, Bernd Hamann, Christoph Garth, Cecilia Aragon, Gunther Weber, and Prabhat. "Seeing the Unseeable" SciDAC Review, Number 8, pp 24-33. LBNL-472E, Summer 2008.

O. Rübel, G. H. Weber, M-Y Huang, E. W. Bethel, S. V. E. Keränen, C. C. Fowlkes, C. L. Luengo Hendriks, A. H. DePace, L. Simirenko, M. B. Eisen, M. D. Biggin, H. Hagen, J. Malik, D. W. Knowles and B. Hamann, "PointCloudXplore 2: Visual Exploration of 3D Gene Expression", (To appear) LBNL-249E, GI Lecture Notes in Informatics, Gesellschaft fuer Informatik (GI), Bonn, Germany, 2008.

C. Silva and J. Freire. "Software Infrastructure for Exploratory Visualization and Data Analysis: Past, Present and Future" Journal of Physics: Conference Series (SciDAC 2008 Conference), 2008.

Book Chapters

E. Wes Bethel, Hank Childs, Ajith Mascarenhas, Valerio Pascucci, and Prabhat. "Scientific Data Managment Challenges in High Performance Visual Data Analysis" In Arie Shoshani and Doron Rotem, editors, Scientific Data Management: Challenges, Existing Technology, and Deployment. Chapman & Hall/CRC Press, 2008.

Technical Reports

Luke J. Gosink, Kesheng Wu, E. Wes Bethel, John D. Owens, Kenneth I. Joy. "Bin-Hash Indexing: A Parallel Method for Fast Query Processing" Technical Report LBNL-729E, Lawrence Berkeley National Laboratory, Berkeley CA, USA, 94720, 2008.

2007

E. W. Bethel, O. Rübel, G. Weber. "Visualization and Analysis of 3D Gene Expression Data." Two-page research highlight. LBNL-63658, Dec 2007.

G. Weber, H. Childs, K. Bonnell, J. Meredith, M. Miller, B. Whitlock, E. W. Bethel. "Production-quality Tools for Adaptive Mesh Refinement Visualization." Two-page research highlight. LBNL-63657, Dec 2007.

E. W. Bethel, J. Chen, I. Yoon. "Interactive, Internet Delivery of Visualization via Structured, Prerendered Imagery." Two-page research highlight. LBNL-63675, Dec 2007.

E. W. Bethel, L. Gosink, J. Anderson, K. Joy. "Variable Interactions in Query-Driven Visualization." Two-page research highlight. LBNL-63674, Dec 2007.

E.W. Bethel, C. Johnson, C. Aragon, Prabhat, O. Ruebel, G. Weber, V. Pascucci, H. Childs, P.-T. Bremer, B. Whitlock, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, B. Hamann, C. Garth, M. Cole, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche. "SciDAC Visualization and Analytcs Center for Enabling Technologies -- Strategy for Petascale Visual Data Analysis Success." CTWatch Quarterly, Volume 3, Number 4, November 2007.

C. Garth, F. Gerhardt, X. Tricoche, H. Hagen. "Efficient Computation and Visualization of Coherent Structures in Fluid Flow Applications," In Proceeding of IEEE Visualization 2007, pp. 1464--1471, Oct 2007.

Luke J. Gosink, John C. Anderson, Kenneth I. Joy, E. Wes Bethel. "Variable Interactions in Query Driven Visualization" In Proceeding of IEEE Visualization 2007, pp. 1400-1407, Oct 2007.

Attila Gyulassy, Vijay Natarajan, Bernd Hamann, Mark Duchaineau, Valerio Pascucci, Eduardo Bringa, Andrew Higginbotham. "Topologically Clean Distance Fields" In Proceeding of IEEE Visualization 2007, pp. 1432-1439, Oct 2007.

Attila Gyulassy, Vijay Natarajan, Bernd Hamann, Valerio Pascucci. "Efficient Computation of Morse-Smale Complexes for Three-dimensional Scalar Functions" In Proceeding of IEEE Visualization 2007, pp. 1440-1447, Oct 2007.

Carlos Scheidegger, Huy Vo, David Koop, Juliana Freire, Claudio Silva. "Querying and Creating Visualizations by Analogy," In Proceeding of IEEE Visualization 2007, pp. 1560--1567, Oct 2007.

I. Wald, H. Friedrich, A. Knoll, C.D. Hansen. "Interactive Isosurface Ray Tracing of Time-Varying Tetrahedral Volumes," In Proceeding of IEEE Visualization 2007, 1727--1734, Oct 2007.

Gunther H. Weber, Peer-Timo Bremer, Valerio Pascucci. "Topological Landscapes: A Terrain Metaphor for Scientific Data," In Proceeding of IEEE Visualization 2007, pp. 1416-1423, Oct 2007.

A. Wiebel, X. Tricoche, D. Schneider, Heike Jänicke, Gerik Scheuermann "Generalized Streak Lines: Analysis and Visualization of Boundary Induced Vortices," In Proceeding of IEEE Visualization 2007, pp. 1735-1742, Oct 2007.

Sung-Eui Yoon and Peter Lindstrom. "Random-Accessible Compressed Triangle Meshes," In Proceeding of IEEE Visualization 2007, pp. 1536--1543, Oct 2007.

"Topological Analysis Provides Deeper Insight into Hydrodynamic Instabilities" ASCR Computing News Roundup, September 2007.

V. Pascucci, G. Scorzelli, P.-T. Bremer, and A. Mascarenhas. "Robust On-line Computation of Reeb Graphs: Simplicity and Speed" In Proceeding of SIGGRAPH 2007 (ACM Transation on graphics), pp. 58-1 to 58-9, Aug 2007.

Sean Ahern. "Petascale visual data analysis in a production computing environment" In Journal of Physics, Conference Series, volume 78, Proceedings of SciDAC 2007, June 2007.

E.W. Bethel, C.R. Johnson, K. Joy, S. Ahern, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, B. Hamann, C. Hansen, D. Laney, P. Lindstrom, J. Meredith, G. Ostrouchov, S.G. Parker, C.T. Silva, A. Sanderson, X. Tricoche. "SciDAC Visualization and Analytics Center for Enabling Technology," In Journal of Physics, Conference Series, volume 78, Proceedings of SciDAC 2007, June 2007.

P.-T. Bremer, E.M. Bringa, M.A. Duchaineau, A.G. Gyulassy, D. Laney, A. Mascarenhas and V. Pascucci. "Topological Feature Extraction and Tracking" In Journal of Physics, Conference Series, volume 78, Proceedings of SciDAC 2007, June 2007.

Hank Childs. "Architectural challenges and solutions for petascale postprocessing" In Journal of Physics, Conference Series, volume 78, Proceedings of SciDAC 2007, June 2007.

C. Jones, K.-L. Ma, A. Sanderson, L. Myers. "Visual Interrogation of Gyrokinetic Particle Simulations," In Journal of Physics, Conference Series, volume 78, Proceedings of SciDAC 2007, June 2007.

Kenneth I. Joy, Mark Miller, Hank Childs, E. Wes Bethel, John Clyne, George Ostrouchov, Sean Ahern. "Frameworks for Visualization at the Extreme Scale" In Journal of Physics, Conference Series, volume 78, Proceedings of SciDAC 2007, June 2007.

Gunther H. Weber, Vincent E. Beckner, Hank Childs, Terry J. Ligocki, Mark C. Miller, Brian Van Straalen and E. Wes Bethel. "Visualization Tools for Adaptive Mesh Refinement Data" In Proceedings of the 4th High-End Visualization Workshop, Tyrol, Austria, June, 2007.

2006

E. Wes Bethel (LBNL), Chris Johnson (Utah), Ken Joy (UC Davis), Sean Ahern (ORNL), Valerio Pascucci (LLNL), Jonathan Cohen (LLNL), Mark Duchaineau (LLNL), Bernd Hamann (UC Davis), Charles Hansen (Utah), Dan Laney (LLNL), Peter Lindstrom (LLNL), Jeremy Meredith (ORNL), George Ostrouchov (ORNL), Steven Parker (Utah), Claudio Silva (Utah), Xavier Tricoche (Utah), Allen Sanderson (Utah), Hank Childs (LLNL). Poster presentation: "VACET: Meet the SciDAC Visualization and Analytics Center for Enabling Technologies" Presented at SciDAC 2006, Denver Co., June, 2006.

Kurt Stockinger, E. Wes Bethel, Scott Campbell, Eli Dart, Kesheng Wu. "Detecting Distributed Scans Using High-Performance Query-Driven Visualization" In Proceedings of Supercomputing 2006 (accepted) 2006.